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Bioinformatics News

News on Bioinformatics continually updated from thousands of sources around the net.

19 hrs ago | CiteULike

In-silico human genomics with GeneCards.

Since 1998, the bioinformatics, systems biology, genomics and medical communities have enjoyed a synergistic relationship with the GeneCards database of human genes .

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Related Topix: Biotech, Science / Technology, Science

Yesterday | Ddc.typepad.com

Informatics

Sometimes it seems that every field wants its own informatics subfield. For example, in the health and medicine arena, you might come across health informatics, consumer health informatics, community health informatics, public health informatics, disease informatics, medical informatics, clinical Informatics, nursing informatics, dental ... (more)

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Related Topix: Science / Technology, Biotech, Science

Yesterday | Express India

New gut virus lives in half the world's population

The virus, named crAssphage, infects one of the most common gut bacterial species, Bacteroides.

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Related Topix: Science / Technology, Biotech, Science

Thu Jul 24, 2014

CiteULike

Aligning two sequences within a specified diagonal band

Comput Appl Biosci , Vol. 8, No. 5. , pp. 481-487, doi:10.1093/bioinformatics/8.5.481 We describe an algorithm for aligning two sequences within a diagonal band that requires only O computation time and O space, where N is the length of the shorter of the two sequences and W is the width of the band.

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Related Topix: Science, Computer Science

Voice of America

New Test Predicts Which Chemicals Could Cause Cancer

Many chemicals have been linked to the development of cancer, but the cancer-causing potential of thousands of others is unknown.

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Related Topix: Boston University

EurekAlert!

Gene changes in breast cancer cells pinpointed with new computational method

Computer scientists at Carnegie Mellon University, working with high-throughput data generated by breast cancer biologists at Lawrence Berkeley National Laboratory, have devised a computational method to determine how gene networks are rewired as normal breast cells turn malignant and as they respond to potential cancer therapy agents.

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Related Topix: Science, Computer Science, Biology, Carnegie Mellon University

CiteULike

Six-fold speed-up of Smith-Waterman sequence database searches using...

Sequence database searching is among the most important and challenging tasks in bioinformatics.

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Related Topix: Science / Technology, Science, Computer Science, CPU, Startups, Intel

Hispanic Business

Edico Genome Raises $10 Million in Series A Financing to...

The financing was led by annual meeting in October. http://photos.prnewswire.com/prnvar/20140716/127788 "Advancing and expanding the use of genomics in the clinic can only be achieved if researchers and physicians can quickly, efficiently and accurately process the immense amount of data generated from a human genome sequence," said .

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Related Topix: CPU, Science / Technology, Venture Capital, Emerging Technology, Biotech, Science, Computers

CiteULike

Effective Automated Feature Construction and Selection for Classification of Biological Sequences

Many open problems in bioinformatics involve elucidating underlying functional signals in biological sequences.

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Related Topix: Science / Technology, Biotech, Science, Computer Science

Wed Jul 23, 2014

HON

Good Odds for Those Who Need Bone Marrow Donor, Study Finds

Most blood cancer patients in the United States who need a bone marrow transplant can find an acceptable match through the National Marrow Donor Program, a new study has determined.

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Related Topix: Biotech, Science / Technology, Science

CiteULike

PhosFox: a bioinformatics tool for peptide-level processing of LC-MS/MS-based phosphoproteomic data.

It is possible to identify thousands of phosphopeptides and -proteins in a single experiment with mass spectrometry-based phosphoproteomics.

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Related Topix: Biotech, Science / Technology, Science, Computer Science

Tue Jul 22, 2014

EurekAlert!

UT Arlington big data team wins $600,000 NSF grant to build gene expression database

Dr. Heng Huang is a University of Texas at Arlington computer science and engineering professor with an expertise in big data and bioinformatics.

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Related Topix: University of Texas at Arlington, Science, Computer Science, Biotech, Science / Technology, Entomology

EurekAlert!

Whole-genome sequencing of bulls in key beef and dairy breeds

An international collaboration known as the '1000 Bull Genomes Project' aims to accelerate breeding for desired traits in beef and dairy cattle while also improving animal health and welfare.

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Related Topix: Life, Beef, Food, Meat, Genetics, Medicine, Biology, Science

EurekAlert!

BGI Tech launches human whole exome sequencing service on complete genomics' advanced platform

July 22, 2014 - BGI Tech Solutions Co., LTD, , a subsidiary of BGI, the world's largest genomics organization, announced today the global launch of a new human whole exome sequencing service based on Complete Genomics' industry-leading platform.

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Related Topix: Science, Biotech

Business Wire

Research and Markets: PCR Technologies Global Market - Forecast to 2019

Polymerase chain reaction is a gene amplification technique that amplifies a single or a few copies of a piece of DNA across several orders of magnitude, generating thousands to millions of copies of a particular DNA sequence.

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Related Topix: Genetics, Medicine, Infectious Diseases, Biotech, Science / Technology, Science

Sat Jul 19, 2014

Bioinformatics

MetDisease--connecting metabolites to diseases via literature

Metabolomics posed a number of bioinformatics challenges associated in data analysis and interpretation.

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Related Topix: Biotech, Science / Technology, Science, University of Michigan Ann Arbor, Ann Arbor, MI, UC San Diego

Fri Jul 18, 2014

CiteULike

Blue: correcting sequencing errors using consensus and context

To insert individual citation into a bibliography in a word-processor, select your preferred citation style below and drag-and-drop it into the document.

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Related Topix: Science / Technology, Biotech, Science

CiteULike

KMC 2: Fast and resource-frugal $k$-mer counting

Motivation: Building the histogram of occurrences of every $k$-symbol long substring of nucleotide data is a standard step in many bioinformatics applications, known under the name of $k$-mer counting.

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Related Topix: Biotech, Science / Technology, Science

Bioinformatics

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

The scale and scope of such data have increased dramatically in the past few years.

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Related Topix: Science, University of Idaho, Moscow, ID, University of Michigan Ann Arbor, UC Los Angeles

Bioinformatics

PRADA: pipeline for RNA sequencing data analysis

For that purpose, we have developed PRADA , a flexible, modular and highly scalable software platform that provides many different types of information available by multifaceted analysis starting from raw paired-end RNA-seq data: gene expression levels, quality metrics, detection of unsupervised and supervised fusion transcripts, detection of ... (more)

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Related Topix: Science, M.D. Anderson Cancer Center, Harvard University, Cambridge, MA, Memorial SloanKettering Cancer Center, Hospital Administration, Medicine, Healthcare Industry

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